Commit Graph

8377 Commits (main)

Author SHA1 Message Date
TAKATSU Tomonari 03dcb474de science/R-cran-Epi: Update to 2.50
Reported by:	portscout
2024-05-31 15:44:05 +00:00
Yuri Victorovich 7b9e3fc821 science/PETSc: update 3.21.1 → 3.21.2
Reported by:	portscout
2024-05-30 03:45:43 -07:00
Fernando Apesteguía 352fb9d9ac science/afni: update to 24.1.15 2024-05-30 08:24:44 +02:00
Wen Heping d002af2079 science/py-DendroPy: Update to 5.0.0 2024-05-29 23:45:44 +00:00
Yuri Victorovich 7227077780 science/{,py-}gemmi: update 0.6.5 → 0.6.6
Reported by:	portscout
2024-05-29 01:49:15 -07:00
Po-Chuan Hsieh f632316a7e
science/py-cfgrib: Update to 0.9.12.0
Changes:	https://github.com/ecmwf/cfgrib/blob/master/CHANGELOG.rst
2024-05-29 04:20:07 +08:00
Po-Chuan Hsieh bd0c325a58
science/cdo: Update to 2.4.1
Changes:	https://code.mpimet.mpg.de/projects/cdo/news
2024-05-28 18:21:25 +08:00
Yuri Victorovich e44abcf250 science/{,py-}dftbplus: update 23.1 → 24.1 2024-05-28 01:12:11 -07:00
Yuri Victorovich bdbfeda4ce science/gromacs: Minor correction 2024-05-27 15:52:35 -07:00
Yuri Victorovich 5214e6c422 science/rdkit: Broken on 15 aarch64
Reported by:	fallout
2024-05-27 13:56:47 -07:00
Yuri Victorovich 12e6720e98 Revert "science/py-scipy: update 1.11.1 → 1.12.0"
This reverts commit 6b7a258af8.
2024-05-26 17:22:42 -07:00
wen 6b7a258af8 science/py-scipy: update 1.11.1 → 1.12.0
PR:	277826
2024-05-26 17:08:26 -07:00
Yuri Victorovich 6461469879 science/nest: Broken on armv7
Reported by:	fallout
2024-05-26 14:57:09 -07:00
Daniel Engberg 3ee20599dc */*: Remove incorrect libtool dependency
All these ports builds without libtool

Tested using Poudriere

Approved by:	portmgr (blanket, build fix)
2024-05-26 12:52:26 +02:00
Jason E. Hale 4b17f0c82b science/qt6-quick3dphysics: Fix patch stage
Mk/Uses/qt.mk: Fix typo that lead to my test builds excluding this
port and to not register it as a LIB_DEPENDS in consumers. [1] Nothing
currently depends on this, but the devel/qt6 metaport technically should,
so I'm bumping its PORTREVISION so that science/qt6-quick3dphysics is
registered as a dependency.

Reported by:	pkg-fallout
MFH:		2024Q2
Pointy hat to:	my 7 months ago self who added this port [1]
2024-05-26 02:58:25 -04:00
Yuri Victorovich 749ee4cb7e science/shelxle: update 1.0.1646 → 1.0.1648
Reported by:	portscout
2024-05-25 13:37:27 -07:00
Yuri Victorovich ae18879948 science/shelxle: update 1.0.1638 → 1.0.1646
Reported by:	portscout
2024-05-24 21:12:12 -07:00
Yuri Victorovich 3a90aeca8c science/{,py-}rmf: update 1.6.0 → 1.6.1
Reported by:	portscout
2024-05-24 21:12:09 -07:00
Jason E. Hale 359c8eed18 Qt6: Update to 6.7.1
As a patch release, Qt 6.7.1 does not introduce any new features but
contains more than 400 bug fixes, security updates, and other
improvements to the top of the Qt 6.7.0 release. See more information
about the most important changes and bug fixes from Qt 6.7.1 release
note.

Enable building of databases/qt6-base_sqldriver@mysql with MariaDB. [1]

Fix build of www/qt6-webengine with the SNDIO option enabled. [2]

Announcement: https://www.qt.io/blog/qt-6.7.1-released
Release note: https://code.qt.io/cgit/qt/qtreleasenotes.git/about/qt/6.7.1/release-note.md

PR:		277922 [1], 279180 [2]
Reported by:	vvd [1], Benjamin Takacs <nimaje+fbz@bureaucracy.de> [2]
MFH:		2024Q2
Security:	f5fa174d-19de-11ef-83d8-4ccc6adda413
2024-05-24 21:55:22 -04:00
Erik Jensen 4749c35ebb science/geant4: Update to 11.2.1
ChangeLog: https://geant4.web.cern.ch/download/release-notes/notes-v11.2.1.txt

PR:		279216
Reported by:	erik@tenku.dk (maintainer)
2024-05-23 18:10:54 +02:00
Thierry Thomas 56ce3d88fb science/gnudatalanguage: upgrade to v1.0.6
A fix has just been released.
2024-05-23 18:02:43 +02:00
Thierry Thomas 5cad1fc444 science/gnudatalanguage: upgrade to v1.0.5
Release note at <https://github.com/gnudatalanguage/gdl/releases/tag/v1.0.5>.
2024-05-23 17:31:30 +02:00
TAKATSU Tomonari f3e6dceb85 science/R-cran-cmprsk: Update to 2.2-12
Reported by:	portscout
2024-05-21 03:45:17 +00:00
Vsevolod Stakhov b66e4949cb security/libsodium: update to 1.0.19, bump dependent ports
PR:	278259
Reported by:	Andrey Korobkov <alster-vinterdalen.se>
2024-05-20 10:33:03 +00:00
Yuri Victorovich b079e7a87c science/tinker: Release was re-rolled yet again 2024-05-19 11:45:05 -07:00
Po-Chuan Hsieh 4871727df2
science/rubygem-rgeo-shapefile: Change RUN_DEPENDS from rubygem-dbf to rubygem-dbf4
- Bump PORTREVISION for dependency change
2024-05-20 01:18:13 +08:00
Po-Chuan Hsieh 1375ed982f
science/py-pyteomics: Update to 4.7.2
Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
2024-05-20 01:15:51 +08:00
Po-Chuan Hsieh 4d687e240e
graphics/gdal: Update to 3.9.0
- Bump PORTREVISION of dependent ports for shlib change
  - databases/postgis31 is skipped due to
  - graphics/R-cran-rgdal is skipped due to build failure and removed from CRAN repository

Changes:	https://github.com/OSGeo/gdal/releases
		https://github.com/OSGeo/gdal/blob/release/3.9/NEWS.md
2024-05-20 01:15:14 +08:00
Yuri Victorovich 5863a5b67a science/gromacs: Fix build on systems without OpenMP
Reported by:	fallout
2024-05-18 09:52:20 -07:00
Jason E. Hale 2204bdcd43 science/InsightToolkit501: Fix build with CMake 3.29
Support for the Comeau compiler was removed.

PR:		278693
2024-05-18 10:47:22 -04:00
Mikael Urankar aabf22e4dc science/zotero: Fix for document indexing
Switch to the more up to date xpdf from:
https://github.com/zotero/cross-xpdf (instead of cross-poppler)

Reported by:	Emir Turkes <emir.turkes@eturkes.com>
2024-05-16 13:29:22 +02:00
Po-Chuan Hsieh c4d2a966e9
science/py-tobler: Add LICENSE_FILE
- Update WWW and clean up pkg-descr
2024-05-16 14:22:09 +08:00
Jason E. Hale 8ac74c2325 */*: Chase math/libqalculate shlib version bump 2024-05-15 16:49:00 -04:00
Jason E. Hale bef8e408ff Qt6: Update to 6.7.0
Qt 6.7 is out with lots of large and small improvements for all of us
who like to have fun when building modern applications and user
experiences, focusing on the expansion of supported platforms and
industry standards. This makes code written with Qt more sustainable
and brings more value in Qt as a long-term investment.

www/qt6-webengine is now based on Chromium version 118.0.5993.220.

Announcement: https://www.qt.io/blog/qt-6.7-released
Release note: https://code.qt.io/cgit/qt/qtreleasenotes.git/about/qt/6.7.0/release-note.md

PySide6: Update to 6.7.0

PySide6 and its related components have been updated alongside the Qt
release for compatibility. Older versions will not build with Qt 6.7.x.

Announcement: https://www.qt.io/blog/qt-for-python-release-6.7

PyQt6: Update to 6.7.0

Minor Makefile cleanups and simplification of MASTER_SITES in pyqt.mk.
As with PySide6, older versions of PyQt6 will not build with Qt 6.7.x.

Announcement: https://www.riverbankcomputing.com/news/PyQt_v6.7.0_Released

PR:		278658
Exp-run by:	antoine
MFH:		2024Q2
Security:	e79cc4e2-12d7-11ef-83d8-4ccc6adda413,
		c6f03ea6-12de-11ef-83d8-4ccc6adda413
2024-05-15 13:55:48 -04:00
Ashish SHUKLA fce0cc3272
all: Bump after lang/go121 update
MFH:		2024Q2
2024-05-13 17:56:04 +00:00
Yuri Victorovich 928e13990a science/tinker: Release was re-rolled again
Reported by:	fallout
2024-05-13 08:04:56 -07:00
Po-Chuan Hsieh ef7f86fdc9
science/py-tobler: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:07 +08:00
Po-Chuan Hsieh 4cccfaf8a4
science/py-skrebate: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:06 +08:00
Po-Chuan Hsieh 0b18d64469
science/py-sklearn-pandas: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:04 +08:00
Po-Chuan Hsieh 71b4221c4c
science/py-scikit-optimize: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:02 +08:00
Po-Chuan Hsieh a21c32dbf6
science/py-pysal: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:07:01 +08:00
Po-Chuan Hsieh f6c9a75d61
science/py-pygeometa: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:59 +08:00
Po-Chuan Hsieh 9e71843145
science/py-pygeodesy: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:57 +08:00
Po-Chuan Hsieh f0e5beeb6a
science/py-pycsw: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:55 +08:00
Po-Chuan Hsieh c545812430
science/py-pyaixi: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:54 +08:00
Po-Chuan Hsieh 705adf4887
science/py-pupynere: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:52 +08:00
Po-Chuan Hsieh b09c4674fc
science/py-netcdf-flattener: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:50 +08:00
Po-Chuan Hsieh 88e2409d05
science/py-liac-arff: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:49 +08:00
Po-Chuan Hsieh 543b808e78
science/py-kinematics: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:47 +08:00
Po-Chuan Hsieh aad4915eff
science/py-geometer: Convert to USE_PYTHON=pep517
- Bump PORTREVISION for package change
2024-05-13 22:06:46 +08:00